Items where Author is "Mitreva, Makedonka"

McNulty, Samantha N. and Abubucker, Sahar and Simon, Gabriel M. and Mitreva, Makedonka and McNulty, Nathan and Fischer, Kerstin and Curtis, Kurt C. and Brattig, Norbert W. and Weil, Gary J. and Fischer, Peter U. (2012) Transcriptomic and Proteomic Analyses of a Wolbachia-Free Filarial Parasite Provide Evidence of Trans-Kingdom Horizontal Gene Transfer. Plos one, 7 (9). pp. 1-12.

Mitreva, Makedonka and The Human Microbiome Project Consortium, * (2012) Structure, function and diversity of the healthy human microbiome. Nature, 486. pp. 207-214.

Martin, John and Sykes, Sean and Young, Sarah and Kota, Karthik and Sanka, Ravi and Sheth, Nihar and Orvis, Joshua and Sodergren, Erica and Weinstock, George M and Mitreva, Makedonka and Wang, Zhengyuan (2012) Optimizing read mapping to reference genomes to determine composition and species prevalence in microbial communities. PLoS One, 7 (6). e36427.

Mitreva, Makedonka and Grupa avtori (2012) A framework for human microbiome research. Nature, 486 (7402). pp. 215-221.

Abubucker, Sahar and Segata, Nicola and Goll, Johannes and Schubert, Alyxandria M. and Izard, Jacques and Cantarel, Brandi L. and Rodriguez-Mueller, Beltran and Zucker, Jeremy and Thiagarajan, Mathangi and Henrissat, Bernard and White, Owen and Kelley, Scott T. and Methe, Barbara and Achloss, Patrick D. and Gevers, Dirk and Mitreva, Makedonka and Huttenhower, Curtis (2012) Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome. PLoS Computational Biology, 8 (6). pp. 1-17.

Li, Ben-Wen and Wang, Zhengyuan and Rush, Amy C. and Mitreva, Makedonka and Weil, Gary J. (2012) Transcription profiling reveals stage- and function-dependent expression patterns in the filarial nematode Brugia malayi. BMC Genomics, 184 (13). pp. 1-15.

Rao, Ramakrishna U and Huang, Yuefang and Abubucker, Sahar and Heinz, Michael and Crosby, Seth D. and Mitreva, Makedonka and Weil, Gary J. (2012) Effects of doxycycline on gene expression in Wolbachia and Brugia malayi adult female worms in vivo. Journal of Biomedical Science, 19 (21). pp. 1-15.

Mitreva, Makedonka (2012) The genome of a blood fluke associated with human cancer. Nature Genetics, 44 (2). pp. 116-118.

Wang, Zhengyuan and Zarlenga, Dante S. and Martin, John and Abubucker, Sahar and Mitreva, Makedonka (2012) Exploring metazoan evolution through dynamic and holistic changes in protein families and domains. BMC Evolutionary Biology. pp. 2-17.

Soblik, Hanns and Younis, Abuelhassan Elshazy and Mitreva, Makedonka and Renard, Bernard Y. (2011) Life Cycle Stage-resolved Proteomic Analysis of the Excretome/Secretome from Strongyloides ratti—Identification of Stage-specific Proteases. Molecular & Cellular Proteomics. pp. 1-16.

Younis, Abuelhassan Elshazy and Geisinger, F and Ajonina-Ekoti, I and Soblik, Hanns and Steen, H and Mitreva, Makedonka and Erttmann, KD and Perbandt, M and Liebau, E and Brattig, Norbert W. (2011) Stage-specific excretory/secretory small heat shock proteins from the parasitic nematode Strongyloides ratti: putative links to host's intestinal mucosal defense system. FEBS J. , 278 (18). pp. 3319-3336.

Wang, Jianbin and Czech, Benjamin and Crunk, Amanda and Wallace, Adam and Mitreva, Makedonka and Hannon, Gregory J. and Davis, Richard E. (2011) Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles. Genome Research, 21. pp. 1462-1477.

Abubucker, Sahar and Martin, John and Taylor, Christina M. and Mitreva, Makedonka (2011) HelmCoP: An Online Resource for Helminth Functional Genomics and Drug and Vaccine Targets Prioritization. PLoS One, 6 (7). e21832.

Dalzell, Johnathan J. and McVeigh, Paul and Warnock, Neil D. and Mitreva, Makedonka and McK Bird, David and Abad, Pierre and Fleming, Day and Mousley, Angela and Marks, Nikki J. and Maule, Aaron G. (2011) RNAi Effector Diversity in Nematodes. Plos Neglected tropical diseases - Open access, 5 (6). pp. 1-11.

Zhang, Ziping and Wang, Yilei and Wang, Shuhong and Liu, Jingtao and Warren, Wesley and Mitreva, Makedonka and Walter, Ronald B. (2011) Transcriptome Analysis of Female and Male Xiphophorus maculatus Jp 163 A. PLoS One , 6 (4). e18379.

Taylor, Christina M. and Abubucker, Sahar and Fischer, Kerstin and Wang, Zhengyuan and Martin, John and Jiang, Dao-Jun and Rosso, Marie and Li, Ben-Wen and Fischer, Peter U. and Mitreva, Makedonka (2011) Targeting Protein-Protein Interactions for Parasite Control. Plos One, 6 (4). pp. 1-12.

Ye, Liang and Hillier, LaDeana W and Minx, Patrick and Thane, Nay and Locke, Devin P. and Martin, John and Chen, Lei and Mitreva, Makedonka and Miller, Jason R and Haub, Kevin V and Dooling, David J and Mardis, Elaine and Wilson, Richard K. and Weinstock, George M and Warren, Wesley (2011) A vertebrate case study of the quality of assemblies derived from next-generation sequences. Genome Biology, 12 (3). pp. 1-7.

Mitreva, Makedonka and Jasmer, Douglas P. and Zarlenga, Dante S. and Grupa avtori (2011) The draft genome of the parasitic nematode Trichinella spiralis. Nature genetics, 43 (3). pp. 228-236.

Mitreva, Makedonka and Grupa avtori (2011) Comparative and demographic analysis of orang-utan genomes. Nature, 469. pp. 529-533.

Li, Ben-Wen and Rush, Amy C. and Jiang, Dao-Jun and Mitreva, Makedonka and Abubucker, Sahar and Weil, Gary J. (2011) Gender-associated genes in filarial nematodes are important for reproduction and potential intervention targets. PLoS Neglected Tropical Diseases, 5 (1). e947.

Cantacessi, Cinzia and Gasser, Robin B. and Strube, Christina and Schnieder, Thomas and Jex, Aaron R. and Hall, Ross S. and Campbell, Bronwyn E. and Young, Neil D. and Ranganathan, Shoba and Sternberg, Paul W. and Mitreva, Makedonka (2011) Deep insights into Dictyocaulus viviparus transcriptomes provides unique prospects for new drug targets and disease intervention. In: Biotechnology Advances. Elsevier B.V., pp. 261-271.

Mitreva, Makedonka and Jasmer, Douglas P. (2010) Trichinella spiralis: Genomic Application to Control a Zoonotic Nematode. Infectious Disorders - Drag Targets, 10 (5). pp. 376-384.

Cantacessi, Cinzia and Mitreva, Makedonka and Campbell, Bronwyn E. and Hall, Ross S. and Young, Neil D. and Jex, Aaron R. and Ranganathan, Shoba and Gasser, Robin B. (2010) First transcriptomic analysis of the economically important parasitic nematode, Trichostrongylus colubriformis, using a next-generation sequencing approach. In: Infection, Genetics and Evolution. Elsevier B.V., pp. 1199-1207.

Cantacessi, Cinzia and Jex, Aaron R. and Hall, Ross S. and Young, Neil D. and Campbell, Bronwyn E. and Joachim, Anja and Nolan, Matthew J. and Abubucker, Sahar and Sternberg, Paul W. and Ranganathan, Shoba and Mitreva, Makedonka and Gasser, Robin B. (2010) A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing. Nucleic Acids Research, 38 (17). pp. 1-12.

Severance, Scott and Rajagopal, Abbhirami and Rao, Anita U. and Cerqueira, Gustavo C. and Mitreva, Makedonka and El-Sayed, Najib M. and Krause, Michael and Hamza, Iqbal (2010) Genome-Wide Analysis Reveals Novel Genes Essential for Heme Homeostasis in Caenorhabditiselegans. Plos Genetics, 6 (7). pp. 1-16.

McNulty, Samantha N. and Foster, Jeremy M. and Mitreva, Makedonka and Dunning Hotopp, Julie C. and Martin, John and Fischer, Kerstin and Wu, Bo and Davis, Paul J. and Kumar, Sanjay and Brattig, Norbert W. and Slatko, Barton E. and Weil, Gary J. and Fischer, Peter U. (2010) Endosymbiont DNA in Endobacteria-Free Filarial Nematodes Indicates Ancient Horizontal Genetic Transfer. HGT in Filarial Nematodes, 5 (6). pp. 1-9.

Nelson, Karen and Weinstock, George M and Highlander, SK and Worley, KC and Creasy, HH and Wortman, JR and Rusch, DB and Mitreva, Makedonka and Grupa avtori (2010) A Catalog of Reference Genomes from the Human Microbiome. Science, 328 (5981). pp. 994-999.

Wang, Zhengyuan and Abubucker, Sahar and Martin, John and Wilson, Richard K. and Hawdon, John and Mitreva, Makedonka (2010) Characterizing Ancylostoma caninum transcriptome and exploring nematode parasitic adaptation. BMC Genomics - Plos Neglected tropical diseases (www.plosntds.org ) - Open Acecess. pp. 1-19.

Hao, You-Jin and Montiel, Rafael and Abubucker, Sahar and Mitreva, Makedonka and Simõesa, Nelson (2010) Transcripts analysis of the entomopathogenic nematode Steinernema carpocapsae induced in vitro with insect haemolymph. In: Molecular Biochemical Parasitology. Elsevier B.V., pp. 79-86.

Martin, John and Abubucker, Sahar and Heizer, Esley and Taylor, Christina M. and Mitreva, Makedonka (2010) Nematode.net update 2011: addition of data sets and tools featuring next-generation sequencing data. Nucleic Acids Research, 40. D720-D728.

Gao, Xin and Wang, Zhengyuan and Martin, John and Abubucker, Sahar and Zhang, Ziping and Mitreva, Makedonka and Hawdon, John (2010) Identification of hookworm DAF-16/FOXO response elements and direct gene targets. PLoS One, 5 (8). e12289.

Cantacessi, Cinzia and Mitreva, Makedonka and Jex, Aaron R. and Young, Neil D. and Campbell, Bronwyn E. and Hall, Ross S. and Doyle, Maria A. and Rabelo, Elida M. and Ranganathan, Shoba and Sternberg, Paul W. and Loukas, Alex and Gasser, Robin B. (2010) Massively Parallel Sequencing and Analysis of the Necatoramericanus Transcriptome. Transcriptome of Adult Necator americanus , 4 (5).

Mitreva, Makedonka and Papenfuss, Antony T. and Whittington, Camilla M. and Locke, Devin P. and Mardis, Elaine and Wilson, Richard K. and Abubucker, Sahar and Wong, Emily SW and Hsu, Artur and Kuchei, Philip W. and Belov, Katherine and Warren, Wesley (2010) Novel venom gene discovery in the platypus. Genome Biology, 11. pp. 1-13.

Brindley, Paul J. and Mitreva, Makedonka and Ghedin, Elodie and Lustigman, Sara (2009) Helminth Genomics: The Implications for Human Health. PLoS Neglected tropical diseases, 3. e538.

Haegeman, Annelies and Jacob, Joachim and Vanholme, Bartel and Kyndt, Tina and Mitreva, Makedonka and Gheysen, Godelieve (2009) Expressed sequence tags of the peanut pod nematode Ditylenchus africanus: The first transcriptome analysis of an Anguinid nematode. Molecular and Biochemical Parasitology, 167 (1). pp. 32-40.

Li, Ben-Wen and Rush, Amy C. and Mitreva, Makedonka and Yin, Yong and Spiro, David and Ghedin, Elodie and Ghedin, Gary (2009) Transcriptomes and pathways associated with infectivity, survival and immunogenicity in Brugia malayi L3. BMC Genomic, Plos Neglected tropical diseases- Open Access. pp. 1-16.

Sahar, Abubuckar and Zarlenga, Dante S. and Martin, John and Yin, Yong and Wang, Zhengyuan and McCarter, James P. and Gasparree, Louis and Wilson, Richard K. and Mitreva, Makedonka (2009) The transcriptomes of the cattle parasitic nematode Ostertagia ostartagi. Veterinary Parasitology, 162 (1-2). pp. 89-99.

Yin, Yong and Martin, John and Abubucker, Sahar and Wang, Zhengyuan and Wyrwicz, Lucijan and Rychlewski, Leszek and McCarter, James P. and Wilson, Richard K. and Mitreva, Makedonka (2009) Molecular determinants archetypical to the phylum Nematoda. BMC Genomics. pp. 1-14.

Elling, Axel A. and Mitreva, Makedonka and Gai, Xiaowu and Martin, John and Recknor, Justin and Hussey, Richard S and Nettleton, Dan and McCarter, James P. and Baum, Thomas J. (2009) Sequence mining and transcript profiling to explore cyst nematode parasitism. Directory of Open Access Journals. pp. 1-17.

Zarlenga, Dante S. and Rosenthal, B and Hoberg, E and Mitreva, Makedonka (2009) Integrating genomics and phylogenetics in understanding the history of Trichinella species. Veterinary Parasitology, 159 (3-4). pp. 210-213.

Mitreva, Makedonka and Mardis, E.R. (2009) Large-scale sequencing and analytical processing of ESTs. Methods in molecular biology (Clifton, N.J.), 533. pp. 153-87.

Martin, John and Abubucker, Sahar and Wylie, Todd and Yin, Yong and Wang, Zhengyuan and Mitreva, Makedonka (2009) Nematode.net update 2008: improvements enabling more efficient data mining and comparative nematode genomics . Nucleic Acids Research, 37. D571-D578.

Mitreva, Makedonka and Smant, Geert and Helder, Johannes (2009) Role of horizontal gene transfer in the evolution of plant parasitism among nematodes. Methods in Molecular Biology, 532. pp. 517-535.

Clifton, Sandra W. and Mitreva, Makedonka (2009) Strategies for Undertaking Expressed Sequence Tag (EST) Projects. In: Expressed Sequence Tags (ESTs). Humana Press, pp. 13-32. ISBN 978-1-58829-759-4

Wang, Zhengyuan and Martin, John and Abubucker, Sahar and Yin, Yong and Gasser, Robin B. and Mitreva, Makedonka (2009) Systematic analysis of insertions and deletions specific to nematode proteins and their proposed functional and evolutionary relevance. BMC Evolutionary Biology, 9 (23). pp. 1-14.

Dieterich, Christoph and Clifton, Sandra W. and Schuster, Lisa N and Chinwalla, Asif and Delehaunty, Kimberly and Dinkelacker, Iris and Fulton, Lucinda and Fulton, Robert and Godfrey, Jennifer and Minx, Pat and Mitreva, Makedonka and Roeseler, Waltraud and Witte, Hanh and Yang, Shiaw-Pyng and Wilson, Richard K. and Sommer, Ralf J and Tian, Huiyu (2008) The Pristionchus pacificus genome provides a unique perspective on nematode lifestyle and parasitism. Nature genetics, 40 (10). pp. 1193-1198.

Yin, Yong and Martin, John and Abubucker, Sahar and Scott, Alan L. and McCarter, James P. and Wilson, Richard K. and Jasmer, Douglas P. and Mitreva, Makedonka (2008) Intestinal Transcriptomes of Nematodes: Comparison of the Parasites Ascarissuum and Haemonchuscontortus with the Free-living Caenorhabditiselegans. Plos Neglected tropical diseases (www.plosntds.org ) - Open Access, 2 (8). pp. 1-12.

Mitreva, Makedonka and Jasmer, Douglas P. (2008) Advances in the sequencing of the genome of the adenophorean nematode Trichinella spiralis. Parasitology, 135 (8). pp. 869-880.

Mitreva, Makedonka and Grupa avtori (2008) Genome analysis of the platypus reveals unique signatures of evolution. Nature, 453 (7192). pp. 175-183.

Mitreva, Makedonka and Gheysen, Godelieve (2008) Exploring the transcriptome of the burrowing nematode Radopholus similis. Molecular Genetics and Genomics, 280 (1). pp. 1-17.

Abubucker, Sahar and Martin, John and Yin, Yong and Fulton, Lucinda and Yang, Shiaw-Pyng and Hallsworth-Pepin, Kym and Johnston, J. Spencer and Hawdon, John and McCarter, James P. and Wilson, Richard K. and Mitreva, Makedonka (2008) The canine hookworm genome: analysis and classification of Ancylostoma caninum survey sequences. Mol Biochem Parasitol, 157 (2). pp. 187-192.

Roze, Erwin and Hanse, Bram and Mitreva, Makedonka and Vanholme, Bartel and Bakker, Jaap and Smant, Geert (2008) Mining the secretome of the root-knot nematode Meloidogyne chitwoodi for candidate parasitism genes. Mol Plant Pathology, 9 (1). pp. 1-10.

Wylie, Todd and Martin, John and Abubucker, Sahar and Yin, Yong and Messina, David and Wang, Zhengyuan and McCarter, James P. and Mitreva, Makedonka (2008) NemaPath: online exploration of KEGG-based metabolic pathways for nematodes. BMC Genomics, 9 (525). pp. 1-10.

Mitreva, Makedonka and Zarlenga, Dante S. and McCarter, James P. and Jasmer, Douglas P. (2007) Parasitic nematodes – from genomes to control. In: Veterinary Parasitology. Elsevier B.V., pp. 31-42.

Mitreva, Makedonka and Elling, Axel A. and Recknor, Justin and Gai, Xiaowu and John, Martin and Maier, Thomas R and McDermott, Jeffery P and Hewezi, Tarek and McK Bird, David and Davis, Eric L and Hussey, Richard S and Nettleton, Dan and McCarter, James P. and Baum, Thomas J. (2007) Divergent evolution of arrested development in the dauer stage of Caenorhabditis elegans and the infective stage of Heterodera glycines. Genome Biology, 8 (10). pp. 1-19.

Mitreva, Makedonka and Grupa avtori (2007) Draft Genome of the Filarial Nematode Parasite Brugia malayi. Science, 317 (5845). pp. 1756-1760.

Casser, Robin B. and Ranganathan, Shoba and Baillie, David and Sternberg, Paul W. and Mitreva, Makedonka and Mardis, Elaine and Wilson, Richard K. (2007) Whole genome sequences of nematodes of the order Strongylida. Research Instructor in Genetics Washington University .

Laha, Thewarach and loukas, Alex and Wattanasatitarpa, Supatra and Somprakhon, Jenjira and Kewgrai, Nonglack and Sithithaworn, Paiboon and Kaewkes, Sasithorn and Mitreva, Makedonka and Brindley, Paul J. (2007) The bandit, a New DNA Transposon from a Hookworm— Possible Horizontal Genetic Transfer between Host and Parasite. Plos Neglected Tropical Diseases, 1 (1). pp. 1-11.

Herpen, Teun WJM van and Goryunova, Svetlana V and Schoot, Johanna van der and Mitreva, Makedonka and Salentijn, Elma and Vorst, Oscar (2006) Alpha-gliadin genes from the A, B, and D genomes of wheat contain different sets of celiac disease epitopes. BMC Genomics. pp. 1-13.

Mitreva, Makedonka and Jasmer, Douglas P. (2006) Biology and genome of Trichinella spiralis. In: WormBook. The Online Review of C. elegans Biology -http://www.wormbook.org/about.html.

Li, Ben-Wen and Rush, Amy C. and Weil, Gary J. and McCarter, James P. and Mitreva, Makedonka (2006) Brugia malayi: effects of radiation and culture on gene expression in infective larvae. In: Molecular Biochemical Parasitology. Elsevier B.V., pp. 201-207.

Mitreva, Makedonka and Wendl, Michael C and Martin, John and Wylie, Todd and Yin, Yong and Larson, Allan and Parkinson, John and Waterston, Robert H. and McCarter, James P. (2006) Codon usage patterns in Nematoda: analysis based on over 25 million codons in thirty-two species. Genome Biology, 7.

Yin, Yong and Martin, John and McCarter, James P. and Clifton, Sandra W. and Wilson, Richard K. and Mitreva, Makedonka (2006) Identification and analysis of genes expressed in the adult filarial parasitic nematode Dirofilaria immitis. International Journal for Parasitology, 36 (7). pp. 829-839.

Mitreva, Makedonka and Roze, Erwin and Overmars, Hein and Schots, Ajren and Helder, Johannes and Bakker, Jaap and Smant, Geert (2006) A Symbiont-Independent Endo-1,4-β-Xylanase from the Plant-Parasitic Nematode Meloidogyne incognita. Mol Plant Microbe Interact, 19 (5). pp. 521-529.

Mitreva, Makedonka and Bird, David M. and Cheysen, Godelieve (2005) Detection of putative secreted proteins in the plant-parasitic nematode Heterodera schachtii. Parasitol Res , 98. pp. 414-424.

Bird, David M. and Blaxter, Mark and McCarter, James P. and Mitreva, Makedonka and Sternberg, Paul W. and Thomas, W.Kelley (2005) A White Paper on Nematode Comparative Genomics. Journal of Nematology, 37 (4). pp. 408-416. ISSN 408-416

Mitreva, Makedonka and Blaxter, Mark and Bird, David M. and McCarter, James P. (2005) Comparative genomics of nematodes. Trends in Genetics, 22 (10). pp. 573-581.

Thompson, Fiona J. and Mitreva, Makedonka and Barker, Gary L.A. and Martin, John and Waterston, Robert H. and McCarter, James P. and Viney, Mark E. (2005) An expressed sequence tag analysis of the life-cycle of the parasitic nematode Strongyloides ratti. In: Molecular and Biochemical Parasitology. Elsever, pp. 32-46.

Li, Ben-Wen and Rush, Amy C. and Crosby, Seth D. and Warren, Wesley and Williams, Steven A. and Mitreva, Makedonka and Weil, Gary J. (2005) Profiling of gender-regulated gene transcripts in the filarial nematode Brugia malayi by cDNA oligonucleotide array analysis. Molecular & Biochemical Parasitology, 143. pp. 49-57.

Mitreva, Makedonka and Appleton, Judith and McCarter, James P. and Jasmer, Douglas P. (2005) Expressed sequence tags from life cycle stages of Trichinella spiralis: Application to biology and parasite control. Veterinary parasitology, 137 (1-2). pp. 13-17.

Mitreva, Makedonka and McCarter, James P. and Arasu, Prema and Hawdon, John and Martin, John and Dante, Mike (2005) Investigating hookworm genomes by comparative analysis of two Ancylostoma species. BMC Genomics. pp. 1-19.

McCarter, James P. and Bird, David M. and Mitreva, Makedonka (2005) Nematode Gene Sequences: Update for December 2005. Journal of Nematology, 37 (4). pp. 417-421. ISSN 417–421

Jasmer, Douglas P. and Mitreva, Makedonka and McCarter, James P. (2004) mRNA sequences for Haemonchus contortus intestinal cathepsin B-like cysteine proteases display an extreme in abundance and diversity compared with other adult mammalian parasitic nematodes. Molecular and Biochemical Parasitology, 137 (2). pp. 297-305.

Mitreva, Makedonka and McCarter, James P. and Martin, John (2004) Comparative genomics of gene expression in the parasitic and free-living nematodes Strongyloides stercoralis and Caenorhabditis elegans. Genome Research. pp. 209-220.

Mitreva, Makedonka and Jasmer, Douglas P. and Appleton, Judith and Martin, John and Dante, Mike and Wylie, Todd and Clifton, Sandra W. and Waterston, Robert H. and McCarter, James P. (2004) Gene discovery in the adenophorean nematode Trichinella spiralis: an analysis of transcription from three life cycle stages. Molecular and Biochemical Parasitology, 137 (2). pp. 277-291.

Wylie, Todd and Martin, John and Dante, Michael and Mitreva, Makedonka and Clifton, Sandra W. and Chinwalla, Asif and Waterston, Robert H. and Wilson, Richard K. and McCarter, James P. (2004) Nematode.net: a tool for navigating sequences from parasitic and free-living nematodes. Nucleic Acids Research, 32. D423-D426.

Mitreva, Makedonka and Elling, Axel A. and Dante, Mike and Kloek, Andrew P and Kalyanaraman, A. and Aluru, S. and Clifton, Sandra W. and Bird, David M. and Baum, Thomas J. and McCarter, James P. (2004) A survey of SL1-spliced transcripts from the root-lesion nematode Pratylenchus penetrans. Mol Gen Genomics, 272 (2). pp. 138-148.

Parkinson, John and Mitreva, Makedonka and Hall, Neil and Blaxter, Mark and McCarter, James P. (2003) 400 000 nematode ESTs on the Net. Trends in Parasitology, 19. pp. 283-286.

McCarter, James P. and Mitreva, Makedonka and Martin, John and Dante, Mike and Wylie, Todd and Rao, Uma and Pape, Deana and Bowers, Yvette and Theising, Brenda and Murphy, Claire V and Kloek, Andrew P and Chiapelli, Brandi J and Clifton, Sandra W. and Bird, David M. and Waterston, Robert H. (2003) Analysis and functional classification of transcripts from the nematode Meloidogyne incognita. Genome Biology, 4 (4). R26.1-R26.19.

Mitreva, Makedonka and Rosso, Marie and Abad, Pierre and Gommers, Fred J and Bakker, Jaap and Smant, Geert (2001) Single pass cDNA sequencing – a powerful tool to analyse gene expression in preparasitic juveniles of the southern root-knot nematode Meloidogyne incognita. Nematology , 3 (2). pp. 129-139.