Mitreva, Makedonka and Elling, Axel A. and Recknor, Justin and Gai, Xiaowu and John, Martin and Maier, Thomas R and McDermott, Jeffery P and Hewezi, Tarek and McK Bird, David and Davis, Eric L and Hussey, Richard S and Nettleton, Dan and McCarter, James P. and Baum, Thomas J. (2007) Divergent evolution of arrested development in the dauer stage of Caenorhabditis elegans and the infective stage of Heterodera glycines. Genome Biology, 8 (10). pp. 1-19.
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Abstract
Background: The soybean cyst nematode Heterodera glycines is the most important parasite in soybean production worldwide. A comprehensive analysis of large-scale gene expression changes
throughout the development of plant-parasitic nematodes has been lacking to date.
Results: We report an extensive genomic analysis of H. glycines, beginning with the generation of 20,100 expressed sequence tags (ESTs). In-depth analysis of these ESTs plus approximately 1,900 previously published sequences predicted 6,860 unique H. glycines genes and allowed a classification by function using InterProScan. Expression profiling of all 6,860 genes throughout the H. glycines life cycle was undertaken using the Affymetrix Soybean Genome Array GeneChip. Our data sets and
results represent a comprehensive resource for molecular studies of H. glycines. Demonstrating the power of this resource, we were able to address whether arrested development in the Caenorhabditis elegans dauer larva and the H. glycines infective second-stage juvenile (J2) exhibits shared gene expression profiles. We determined that the gene expression profiles associated with the C. elegans dauer pathway are not uniformly conserved in H. glycines and that the expression profiles of genes for metabolic enzymes of C. elegans dauer larvae and H. glycines infective J2 are dissimilar.
Conclusion: Our results indicate that hallmark gene expression patterns and metabolism features are not shared in the developmentally arrested life stages of C. elegans and H. glycines, suggesting that developmental arrest in these two nematode species has undergone more divergent evolution
than previously thought and pointing to the need for detailed genomic analyses of individual parasite species.
| Item Type: | Article |
|---|---|
| Subjects: | Medical and Health Sciences > Other medical sciences |
| Divisions: | Faculty of Medical Science |
| Depositing User: | Marija Kalejska |
| Date Deposited: | 29 Nov 2012 14:47 |
| Last Modified: | 23 May 2013 13:17 |
| URI: | https://eprints.ugd.edu.mk/id/eprint/2484 |
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