FDONT: Fast Detection of Non-Crossing Tandems

Stojanov, Done and Mileva, Aleksandra (2017) FDONT: Fast Detection of Non-Crossing Tandems. Annals of West University of Timisoara, Series of Biology, 20 (2). pp. 171-178. ISSN 2285-7044

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Abstract

A new solution of the problem of computational tandem repeats detection is proposed. Non-crossing tandem repeats in genomic data are identified in few seconds on regular computer, due to computational jumps, out of tandems being already identified. Maximal left and right template extension is also employed. For practical use a desktop application was developed, allowing user to specify subject sequence for analysis and repeats’ search parameters.

Item Type: Article
Subjects: Natural sciences > Biological sciences
Natural sciences > Computer and information sciences
Divisions: Faculty of Computer Science
Depositing User: Done Stojanov
Date Deposited: 18 Jan 2018 09:34
Last Modified: 22 Jan 2018 10:26
URI: http://eprints.ugd.edu.mk/id/eprint/18950

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